About this Course

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Shareable Certificate
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Start instantly and learn at your own schedule.
Flexible deadlines
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Beginner Level
Approx. 11 hours to complete
Russian
Shareable Certificate
Earn a Certificate upon completion
100% online
Start instantly and learn at your own schedule.
Flexible deadlines
Reset deadlines in accordance to your schedule.
Beginner Level
Approx. 11 hours to complete
Russian

Offered by

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Saint Petersburg State University

Syllabus - What you will learn from this course

Week
1

Week 1

2 hours to complete

Неделя 1 - Введение (Week 1 - Introducton)

2 hours to complete
8 videos (Total 61 min)
8 videos
Сиквенсные проекты (Sequencing Projects)3m
Алгоритмы сборки (Assembly Algorithms)6m
Подходы к анализу данных (Data Analysis Approaches)6m
Знакомство с методами выделения геномной ДНК (Genomic DNA Isolation techniques overview) (13:49)13m
Определение количества и качества ДНК (DNA quality and quantity control) (07:37)7m
Подготовка ДНК-библиотек для секвенатора Illumina MiSeq (DNA-library preparation for Illumina MiSeq platform) (13:21)13m
Запуск секвенатора Illumina MiSeq (Illumina MiSeq sequencer running) (03:25)3m
1 practice exercise
Тест 1 (Quiz 1)30m
Week
2

Week 2

1 hour to complete

Неделя 2 - Технологии секвенирования (Sequencing Technologies)

1 hour to complete
4 videos (Total 41 min)
4 videos
Обзор технологий нового поколения (NGS Technologies Overview)7m
454, Ion Torrent, SOLiD, Illumina14m
Synthetic Long Reads, PacBio, Oxford Nanopore9m
1 practice exercise
Тест 2 (Quiz 2)30m
Week
3

Week 3

1 hour to complete

Неделя 3 - Контроль качества (Quality Control)

1 hour to complete
6 videos (Total 50 min)
6 videos
Форматы данных, шкала Phred (Data Formats, Phred Scale)4m
Проверка качества. FastQC (Quality Check. FastQC)10m
Пример - часть 1 (Case Study - part 1)9m
Пример - часть 2 (Case Study - part 2)8m
Введение в Linux (Introduction to Linux)13m
1 practice exercise
Тест 3 (Quiz 3)30m
Week
4

Week 4

2 hours to complete

Неделя 4 - Сборка ДНК de novo (De novo DNA assembly)

2 hours to complete
7 videos (Total 72 min)
7 videos
Сборка ДНК de novo - часть 2 (De novo DNA assembly - part 2)15m
Алгоритмы (Algorithms)6m
Сложность алгоритмов (Algorithms Complexity)9m
Overlap Layout Concensus9m
Графы де Брюйна (De Bruijn Graphs)8m
Алгоритмы сборки геномов (Genome Assembly Algorithms)10m
1 practice exercise
Тест 4 (Quiz 4)30m

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