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Statistics by example activities

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A Crash Course in Data Science

Johns Hopkins University

4.5 (4,965 ratings) | 120K Students Enrolled

Course 1 of 5 in the Executive Data Science Specialization

By now you have definitely heard about data science and big data. In this one-week class, we will provide a crash course in what these terms mean and how they play a role in successful organizations. This class is for anyone who wants to learn what all the data science action is about, including those who will eventually need to manage data scientists. The goal is to get you up to speed as quickly as possible on data science without all the fluff. We've designed this course to be as convenient as possible without sacrificing any of the essentials. This is a focused course designed to rapidly get you up to speed on the field of data science. Our goal was to make this as convenient as possible for you without sacrificing any essential content. We've left the technical information aside so that you can focus on managing your team and moving it forward. After completing this course you will know. 1. How to describe the role data science plays in various contexts 2. How statistics, machine learning, and software engineering play a role in data science 3. How to describe the structure of a data science project 4. Know the key terms and tools used by data scientists 5. How to identify a successful and an unsuccessful data science project 3. The role of a data science manager Course cover image by r2hox. Creative Commons BY-SA: https://flic.kr/p/gdMuhT

Skills You'll Learn

Data Science, Data Analysis, Machine Learning, Project

Reviews

4.5 (4,965 ratings)

5 stars
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YM

Sep 14, 2017

Great to do if, you want to dive into data science or machine learning. It is a must do, if you have no idea of the rationale behind statistics and data science as well as the need for it.

LM

Oct 23, 2016

This was really a crash course in various aspects of data science, with words being thrown around and defined for a lay person like myself. Overall, this was a good course for beginners.

From the lesson

A Crash Course in Data Science

This one-module course constitutes the first "week" of the Executive Data Science Specialization. This is an intensive introduction to what you need to know about data science itself. You'll learn important terminology and how successful organizations use data science.

Statistics by example activities11:43

Taught By

Jeff Leek, PhD
Associate Professor, Biostatistics
Brian Caffo, PhD
Professor, Biostatistics
Roger D. Peng, PhD
Associate Professor, Biostatistics

Transcript

Hi, my name is Brian Caffo,

and this is the lecture on what statistics is good for.

Now at the start of every class, we try to define concepts,

so I went to the authority and

asked Google what statistics was good for, and it came up with this.

Statistics, the practice or science of collecting and analyzing numerical data in

large quantities, especially for the purpose of inferring proportions

in a whole from those in a representative sample, that's quite a mouthful.

So I've decided instead, of trying to define statistics, to really just pick up

some of the core activities of statistics and go through some examples of those.

When I think about the core of statistics

I come up with four key activities that define the field.

There are of course others, and all of these activities are overlapping.

They're not perfectly parcellating okay, but these four activities

are descriptive analysis, which includes things like exploratory data analysis,

just quantification, like creating tables, summarization and unsupervised clustering.

Inference, the second topic includes things like estimation,

sampling, variability, and defining populations.

Prediction, the third activity that I think I've associated with statistics

includes things like machine learning,

supervised learning any instance where we wanna create a lot of predictions

from maybe a lot of predictors, or even just a few predictors.

And then design, design is the process of designing experiments.

So again, these four activities to me cover a lot of what I

think of as statistics, and they're overlapping.

Inference and prediction are, of course, highly overlapping.

Descriptive analysis and inference, they're all quite a bit overlapping, but

let me go through some examples of each of these to get you sort of thinking

about some of these topics and how statistics might be useful for you.

So here let's start with descriptive analysis, and

I put up a picture of the great Roger Peng's Exploratory Data Analysis book,

which you can get for free on Leanpub.

By the way, I think that's Roger's actual dog on the cover, by the way.

So let's talk a little bit about descriptive analysis, and

in each case when I described one of these four activities I

tried to come up with an example that's a good defining example of these.

In this case, I came up with the example that's from my field,

Functional Magnetic Resonance Imaging, that really created quite a stir.

In this case, some really good researchers, Power, Barnes,

Snyder, Schlager and Peterson, real heavy hitters in this area,

did this great plot and they, let me summarize what's going on in this plot.

They were looking, were interested a lot in this area,

is correlations between different areas in the brain with respect to brain activity.

So we want to know when brain activity goes up and

down, when that correlates in different areas of the brain.

We call that connectivity.

And what they figured out by doing this plot,

is when they got rid of some bad scans from people moving their head around,

that the estimated correlations from their data changed quite a bit, and the short

range correlations changed in a different way from the long range correlations.

And this had profound impact on our field, because everyone had thought

up to that point that they had been doing a good job of getting rid of head motion,

but this exploratory plot really was a defining characteristic for

making the field understand that well no, there was some motion leftover.

And it's possible that a lot of what's being reported in the literature is not

actual brain cognitivity of scientific interest,

but whether or not people are moving their head in the scanner.

And I don't know these folks personally, but I can imagine them going through

an exploratory data analysis, seeing this plot, and having an aha moment.

And that's I think, what exploratory data analysis is best for

is really coming up with hypotheses.

Since this paper was published, mountains of research

has been done on the subject of motion in the fMRI scanner.

So that's a great example in my mind of an exploratory data analysis plot,

this plot made it into their paper and created quite a stir.

Okay, let's now talk about inference.

I have a picture of my much more austere statistical inference Leanpub book,

which you can get for free on Leanpub if you wanna read more about the subject of

statistical inference.

I define statistical inference as the process of making conclusions about

populations from samples.

And to me, it was pretty easy to think of a famous example

of statistical inference because we're confronted with one very frequently and

that is election polling.

In that case, the population we're interested in making inferences about is

the population of voters on election day, and

we want to know the proportion of them that will vote for a candidate.

So we are confronted with a fairly classical statistical inference problem

every two years, four years for presidential elections, and in fact,

in the 2012 presidential election,

there was quite a brew ha ha exactly over the process of statistical inference.

In fact, one of the news television shows on the night

of the election, one of the political pundits,

Carl Rogue, just refused to believe the,

in fact, their own team's polling results.

And even prior, well prior to that night, the statistician,

Nate Silver, had been doing a lot of publicity,

really kind of promoting the idea that well, Obama's really for the most part

locked up this election to much derision from a lot of the political pundits.

And what happened after the election was a very interesting discussion

about the role of inference, and

about the role of how much we believe inference when discussing polling.

So if you want an interesting collection of reading on statistical inference and

how it plays out in the media, then you can read up on the 2012 election.

But at any rate, more germane to this class is the idea

that election polling is a great example of statistical inference.

We have a clearly defined population of interest,

a clear parameter that we're interested in, and we can't poll everyone, so

we're gonna get an estimate of that population parameter from a sample.

Let's talk about prediction, and

I put a link here to Jeff Leagues practical machine learning class

which is a great class to learn about the details of prediction.

So I didn't have, again this is another example where I didn't have to think too

hard about coming up with a really well known example of prediction,

and here I thought about stock market prediction.

And I think, to me one of the characteristics of

prediction over inference, because those two subjects bleed together quite

a bit, one of the hallmarks of prediction,

is a move away from trying to understand mechanisms and models, in a move toward

trying to actually create predictions and

really evaluate them with how accurate the predictions are not how much of

the unknown state of the world a model would explain.

So, to me stock market predictions are a great example of this, because for

many people who are predicting the stock market,

what they really care about is simply the losses or

gains, the monetary losses or gains that occur from the predictions, okay?

And, this is the modern way to think about predictions I might add.

And so, the frame of mind has shifted whereas someone who was

an academic studying the markets might be interested in why,

the why the market moves in the ways that it does, regardless of whether or

not they personally make a lot of money off of that knowledge.

Another great example of prediction that's occurring a lot lately and

probably one of the things that drove you to this class, is how important modern

machine learning and modern prediction algorithms have become in data science.

For example, Amazon wants to recommend for

you things that you might wanna buy on their site.

Netflix wants to recommend movies.

At the heart of all these activities is a machine learning process

that's coming up with these recommendations.

And again, they care less about the underlying psychology and

fundamental truths of why you're doing these things, but

more care about, we wanna give the person the most relevant ads, so

they click and then they buy things.

So, a huge chunk of marketing and

online retail and etc., all rely on machine learning now.

It's been somewhat of a revolution in prediction.

Finally, the last thing that we wanted to talk about was design, and

design is perhaps one of the most important things that we cover.

Though it's often overlooked, and it's often overlooked because in many,

many settings we don't have control over the design.

We just get the data that we get, and we don't have a choice over it.

However, and I put up a picture of the famous R.A. Fisher's book.

This is a reprint of it from Oxford, the Statistical Methods Experimental Design

and Scientific Interference is a real classic, so, and R.A.

Fisher was the patriarch of the idea of statistical design.

So when trying to think of an example for statistical design,

the first thing that came to my mind for data science was AB testing, sort of

the most classy examples of statistics design in the data science world.

But I wanna instead talk more about clinical trials,

because I think clinical trials impact our lives more.

When things are really on the line, when the government has to decide whether or

not to allow a drug, or a therapy to be executed to the population at large.

There's a demand to have a clinical trial, and it's so important that there

are entities like clinicaltrials.gov to keep track and monitor clinical trials.

The hallmark of a clinical trial is the randomization of treatment groups, so

that it balances unobserved co-variants.

So the idea of randomization is the fundamental hallmark of both clinical

trials and AB testing, but germane to our discussion today is the fact that,

that randomization is part of a carefully controlled experimental design.

In a clinical trial,

they're trying to control as much of the experimental design as possible, and

that's one of these four corners of the field of statistics that is so important.

So just to remind you what these four activities are,

they were exploratory data analysis, inference,

prediction, experimental design.

So, I look forward to seeing you in some of our future classes, and

we'll talk a little bit more about each of these topics in turn.

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