In this course, you will follow in the footsteps of the bioinformaticians investigating the COVID-19 outbreak by assembling the SARS-CoV-2 genome. Whether you’re new to the world of computational biology, or you’re a bioinformatics expert seeking to learn about its applications in the COVID-19 pandemic, or somewhere in between, this course is for you! As you go through this journey, we will introduce and explain genomic concepts and give you many opportunities to practice your skills, and we will provide a series of problems with gradually increasing complexity. This first course will only discuss the assembly of the SARS-CoV-2 genome, but future courses in this series will explore follow-up bioinformatics analyses used in the COVID-19 pandemic.
Hacking COVID-19 — Course 1: Identifying a Deadly Pathogen
This course is part of Applied Bioinformatics Specialization
Instructors: Mikhail Rayko
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There are 2 modules in this course
In Chapter 1, we will first travel back in time to learn about the history of the SARS outbreak of 2003. Next, we will travel to late 2019 to learn about the origins of SARS-CoV-2, a novel virus that wreaked havoc upon the world during the COVID-19 pandemic. Lastly, we will explore the biology behind this mysterious virus as we take our first steps towards Hacking COVID-19.
What's included
2 videos1 reading1 app item
In Chapter 2, we will learn about how modern technologies are able to sequence DNA in small chunks. Next, we will learn how to use SPAdes, a popular genome assembly tool, to reconstruct the SARS-CoV-2 genome from small fragments. Lastly, we will learn how to use QUAST to assess the quality of our assembled SARS-CoV-2 genome.
What's included
1 video1 reading1 app item
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University of California San Diego
University of California San Diego
University of California San Diego
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Reviewed on May 4, 2021
I hope it soon comes course 2! continue this series!!
Reviewed on Sep 30, 2021
A very organized and systematic way of delivering the course. Special thanks to Dr. Niema Moshiri for guiding me through my doubts. Looking forward in doing the second course of this series as well!
Reviewed on Dec 23, 2021
Enjoyed learning about coronaviruses in depth and learned to use tools used in sequencing a DNA. Thank you!
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