Back to Experimental Methods in Systems Biology
Icahn School of Medicine at Mount Sinai

Experimental Methods in Systems Biology

Learn about the technologies underlying experimentation used in systems biology, with particular focus on RNA sequencing, mass spec-based proteomics, flow/mass cytometry and live-cell imaging. A key driver of the systems biology field is the technology allowing us to delve deeper and wider into how cells respond to experimental perturbations. This in turns allows us to build more detailed quantitative models of cellular function, which can give important insight into applications ranging from biotechnology to human disease. This course gives a broad overview of a variety of current experimental techniques used in modern systems biology, with focus on obtaining the quantitative data needed for computational modeling purposes in downstream analyses. We dive deeply into four technologies in particular, mRNA sequencing, mass spectrometry-based proteomics, flow/mass cytometry, and live-cell imaging. These techniques are often used in systems biology and range from genome-wide coverage to single molecule coverage, millions of cells to single cells, and single time points to frequently sampled time courses. We present not only the theoretical background upon which these technologies work, but also enter real wet lab environments to provide instruction on how these techniques are performed in practice, and how resultant data are analyzed for quality and content.

Status: Analytical Chemistry
Status: Bioinformatics
Course18 hours

Featured reviews

CB

5.0Reviewed May 23, 2020

excellent overview of experimental methods in systems biology

EC

5.0Reviewed May 7, 2020

Un excelente curso que da un panorama muy útil de las herramientas comúnmente empleadas para experimentos enfocados a la biología de sistemas

MD

5.0Reviewed Jun 20, 2021

T​he lab videos are great, thanks for teaching us. Not all university can afford those machines. If you have latest methods or anything please introduce more courses.

AH

5.0Reviewed Nov 29, 2020

Amazing course, only the final exam was rather an excercise in finding out out where the answers differ than trying to really understand what should be the ringht answer. I learnt a lot, thank you!

EM

5.0Reviewed Dec 3, 2015

Great course,Recommended if you are interest in new technologies

DM

5.0Reviewed Aug 5, 2022

Gained meaningful insights into a new field of Systems Biology with this course.

FP

5.0Reviewed Jun 2, 2016

Excellent course with a wealth of information about system biology technologies

KI

4.0Reviewed Mar 1, 2016

HighTech!! Quite difficult for someone who not from the field .

SB

4.0Reviewed Mar 5, 2016

the lab was fasinating . i never seen those big machin in my life. THANKS!!!

CN

4.0Reviewed Jun 4, 2020

The audio quality for the laboratory sessions was somewhat poor.

GI

4.0Reviewed Feb 20, 2016

Thanks for overview of experimental methods and references to relevant articles!"Complete the essay" quizzes looks like a joke

SJ

5.0Reviewed Sep 21, 2019

Loved this course. Prof. Birtwistle is really into teaching and liked the way he has organized this course. Thanks!

All reviews

Showing: 20 of 56

Paul Godden
1.0
Reviewed Mar 31, 2020
Esteban Charria
5.0
Reviewed May 8, 2020
Sheetal Joshi-Panday
5.0
Reviewed Sep 22, 2019
Guolong Mo
3.0
Reviewed Jan 3, 2021
Felix E. Rivera-Mariani, PhD
5.0
Reviewed Jun 3, 2016
Eduardo Ramírez Montiel
5.0
Reviewed Dec 4, 2015
Himanshu Grover
4.0
Reviewed Feb 21, 2019
Joyce C. Morales Aparicio
4.0
Reviewed May 12, 2019
Jorge Alberto Guzmán Maldonado
3.0
Reviewed Jan 9, 2024
Harshit Kumar Sinha
5.0
Reviewed May 4, 2020
Jane Seng
5.0
Reviewed Feb 23, 2024
Adam Husár
5.0
Reviewed Nov 29, 2020
julio cesar rosales medina
5.0
Reviewed Aug 7, 2016
Yuridia Martínez
5.0
Reviewed Jun 8, 2020
Mimi Daran
5.0
Reviewed Jun 21, 2021
Luna Zhang
5.0
Reviewed Jan 9, 2021
Mark Ewusi Shiburah
5.0
Reviewed Sep 30, 2020
Dr Sathish Muthu
5.0
Reviewed Aug 6, 2022
Vitória Samartin Botezelli
5.0
Reviewed Jul 10, 2020
Cristina Banfi
5.0
Reviewed May 24, 2020