This course is presented by the University of Colorado Denver in collaboration with the Vanderbilt Genetics Institute at Vanderbilt University Medical Center and the International Genetic Epidemiology Society. It is designed to provide students with the background and knowledge foundations necessary to conduct statistical analysis of genetic association study data. This course includes multiple lectures and evaluations on each of the topics: the history of genetics research presented by Dr. Nancy Cox, foundational concepts in population genetics presented by Dr. Bruce Weir, population structure in genetic association studies presented by Dr. Todd Edwards, quality control in genetic studies presented by Dr. Goncalo Abecasis, analysis of population-based case-control association studies presented by Dr. Celia Greenwood, and analysis of family-based studies presented by Dr. Joan Bailey-Wilson. Examples of concepts and reference literature are also provided in this 6-module course.
Taught by Dr. Nancy Cox, Vanderbilt University Medical Center. In this module you will better understand genetic epidemiology from its origins to how modern ‘omics is integrated into genetic epidemiology of complex traits. Coverage includes introduction of liability and threshold models, genetic regulation of gene expression, and transcriptome imputation.
Das ist alles enthalten
11 Videos4 Lektüren1 Aufgabe1 Diskussionsthema
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11 Videos•Insgesamt 69 Minuten
Course Introduction•2 Minuten
Module 1 Introduction: What is Genetic Epidemiology?•1 Minute
Origins of Genetic Epidemiology•8 Minuten
Legacies of these Origins and Scientific Rigor•8 Minuten
Liability and Threshold Models: Introduction•7 Minuten
Testing and an Example•3 Minuten
Genetic Regulation of Gene Expression•9 Minuten
Introduction•4 Minuten
Methods•9 Minuten
Methods Continued and Extension•9 Minuten
Pleiotropy•10 Minuten
4 Lektüren•Insgesamt 35 Minuten
Acknowledgements and Instructors•10 Minuten
Glossary•10 Minuten
Get help and meet other learners. Join your Community!•5 Minuten
References and Links•10 Minuten
1 Aufgabe•Insgesamt 45 Minuten
Module 1 Summative Assessment•45 Minuten
1 Diskussionsthema•Insgesamt 10 Minuten
Module 1 Discussion Prompt•10 Minuten
Introduction to Population Genetics: Models and Assumptions
Modul 2•3 Stunden abzuschließen
Moduldetails
Taught by Dr. Bruce Weir, University of Washington. Methods and designs using genetic data are built upon the foundation of population genetics. In this module, you will learn these foundations, including the Hardy Weinberg principle, genetic drift, population structure, inbreeding, and linkage disequilibrium. These principles will be essential to subsequent modules in this course.
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16 Videos1 Lektüre1 Aufgabe1 Diskussionsthema
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16 Videos•Insgesamt 115 Minuten
Introduction to Population Genetics•1 Minute
Hardy-Weinberg Equilibrium Definition and Implications•9 Minuten
HWE Testing and P-Values•9 Minuten
HWE Testing Power, QQ Plots, and Multiple Tests•5 Minuten
HW Departures and Population Structure•8 Minuten
Genetic Drift I•8 Minuten
Genetic Drift II•8 Minuten
Population Structure I•9 Minuten
Population Structure II•8 Minuten
Inbreeding and Relatedness I•9 Minuten
Inbreeding and Relatedness II•8 Minuten
Inbreeding and Relatedness III•8 Minuten
Linkage Disquilibrium I•7 Minuten
Linkage Disquilibrium II•6 Minuten
Linkage Disquilibrium III•6 Minuten
Linkage Disquilibrium IV•5 Minuten
1 Lektüre•Insgesamt 10 Minuten
Related Articles•10 Minuten
1 Aufgabe•Insgesamt 60 Minuten
Module 2 Summative Assessment•60 Minuten
1 Diskussionsthema•Insgesamt 15 Minuten
Module 2 Discussion Prompt•15 Minuten
Population Structure and Genetic Association Studies
Modul 3•3 Stunden abzuschließen
Moduldetails
Taught by Dr. Todd Edwards, Vanderbilt University Medical Center. Building from the introduction to population genetics, in this module you will learn processes that lead to genetic differences between populations, methods to characterize these differences, and how to conduct association studies in structured populations. In addition, you will be able to describe how admixture methods can be applied for association mapping.
Das ist alles enthalten
12 Videos2 Lektüren1 Aufgabe1 Diskussionsthema
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12 Videos•Insgesamt 66 Minuten
Population Structure•1 Minute
Definition of Population Structure and Brief Overview of Human History•7 Minuten
Factors the Influence Population Structure and Genetic Drift•8 Minuten
Natural Selection•9 Minuten
Examples of Population Structure in Modern Humans•8 Minuten
Pima Example•5 Minuten
Statistical Methods I: Structured Association and Genomic Control•6 Minuten
Statistical Methods II: Principal Components Analysis•5 Minuten
Basic Quality Control in Genetic Data: Data Structure
Modul 4•2 Stunden abzuschließen
Moduldetails
Taught by Dr. Gonçalo Abecasis, University of Michigan and Regeneron, Inc. Quality control is an important step for high throughput genotype data. In this module, you will learn a range of different approaches to identify and to deal with quality problems at different stages of the analysis. In addition, genotype imputation is introduced to infer genotypes at markers that were not typed in the study samples.
Das ist alles enthalten
11 Videos1 Lektüre1 Aufgabe1 Diskussionsthema
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11 Videos•Insgesamt 60 Minuten
Basic Quality Control in Genetic Data•1 Minute
Motivation and Background•7 Minuten
Introduction to Quality Control•7 Minuten
QQplots: Part 1•5 Minuten
QQplots: Part 2•5 Minuten
Mendelian Inconsistency Checks•8 Minuten
Population Structure: Part 1•5 Minuten
Population Structure: Part 2•6 Minuten
Genotype Imputation: Introduction•5 Minuten
Genotype Imputation: The Details, Part 1•5 Minuten
Genotype Imputation: The Details, Part 2•7 Minuten
1 Lektüre•Insgesamt 10 Minuten
Optional Readings•10 Minuten
1 Aufgabe•Insgesamt 60 Minuten
Module 4 Summative Assessment•60 Minuten
1 Diskussionsthema•Insgesamt 10 Minuten
Module 4 Discussion Prompt•10 Minuten
Population-Based Association Studies
Modul 5•3 Stunden abzuschließen
Moduldetails
Taught by Dr. Celia Greenwood, McGill University. Population based association studies have played an important role in mapping genes and genomic regions for complex traits by detecting association between alleles and a trait. In this module, you will learn basic measures of association, common modeling strategies, how to adjust for multiple testing and why, how to evaluate association results, and how to increase reproducibility of study results, including the use of meta-analysis and genetic imputation.
Das ist alles enthalten
14 Videos1 Lektüre1 Aufgabe1 Diskussionsthema
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14 Videos•Insgesamt 71 Minuten
Population-Based Association Studies•1 Minute
Basic Measures: Part 1•5 Minuten
Basic Measures: Part 2•8 Minuten
Common Modeling Strategies: Part 1•6 Minuten
Common Modeling Strategies: Part 2•5 Minuten
Introduction to Multiple Testing: Part 1•5 Minuten
Introduction to Multiple Testing: Part 2•6 Minuten
Reproducibility: Part 1•5 Minuten
Reproducibility: Part 2•6 Minuten
Introduction to Genotype Imputation: Part 1•6 Minuten
Introduction to Genotype Imputation: Part 2•3 Minuten
Introduction to Meta-Analysis and Consortia: Part 1•5 Minuten
Introduction to Meta-Analysis and Consortia: Part 2•4 Minuten
Introduction to Meta-Analysis and Consortia: Part 3•5 Minuten
1 Lektüre•Insgesamt 10 Minuten
Resources•10 Minuten
1 Aufgabe•Insgesamt 60 Minuten
Module 5 Summative Assessment•60 Minuten
1 Diskussionsthema•Insgesamt 15 Minuten
Module 5 Discussion Prompt•15 Minuten
Family-Based Designs
Modul 6•3 Stunden abzuschließen
Moduldetails
Taught by Dr. Joan Bailey Wilson, National Human Genome Research Institute, National Institutes of Health. In this module, you will learn about the various ways in which family-based collections of genetic data are utilized in Genetic Epidemiology. This includes methods that provide support that a genetic component to a trait exists as well as to identify modes of inheritance consistent with a set of data. In addition, linkage methods, which identify large regions of the genome, and association methods, which identify a smaller set of variants, are covered to understand genetic factors affecting a trait.
Das ist alles enthalten
18 Videos1 Lektüre1 Aufgabe1 Diskussionsthema
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18 Videos•Insgesamt 107 Minuten
Family-Based Designs•1 Minute
Overview•6 Minuten
Familial Clustering•6 Minuten
Twin Studies•7 Minuten
Other Designs•8 Minuten
Classical Methods•7 Minuten
Modern Methods•3 Minuten
Basics Part 1•7 Minuten
Basics Part 2•6 Minuten
Recombination and Mapping•7 Minuten
Parametric Methods•8 Minuten
Model-Free Methods•9 Minuten
Overview Part 1•8 Minuten
Overview Part 2•4 Minuten
Types of Methods•5 Minuten
Overview•3 Minuten
Linkage•8 Minuten
Association•3 Minuten
1 Lektüre•Insgesamt 10 Minuten
References and Software•10 Minuten
1 Aufgabe•Insgesamt 60 Minuten
Module 6 Summative Assessment•60 Minuten
1 Diskussionsthema•Insgesamt 15 Minuten
Module 6 Discussion Prompt•15 Minuten
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4.5
51 Bewertungen
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4 stars
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Zeigt 3 von 51 an
V
VG
5·
Geprüft am 24. Feb. 2025
more current scenarios should have been introduced
A
AS
4·
Geprüft am 19. Mai 2025
For the quizzes, it would be nice if they were problem based questions, and we could use some of the equations to calculate for a final answer. Otherwise concepts were good.
J
JB
5·
Geprüft am 27. Nov. 2022
Excellent introductory lectures. I learned alternative ways of presenting this material and corrected some details from self study.
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