When you enroll in this course, you'll also be enrolled in this Specialization.
Learn new concepts from industry experts
Gain a foundational understanding of a subject or tool
Develop job-relevant skills with hands-on projects
Earn a shareable career certificate
There are 4 modules in this course
The other two courses in this specialisation require you to perform deterministic modelling - in other words, the epidemic outcome is predictable as all parameters are fully known. However, this course delves into the many cases – especially in the early stages of an epidemic – where chance events can be influential in the future of an epidemic. So, you'll be introduced to some examples of such ‘stochasticity’, as well as simple approaches to modelling these epidemics using R. You will examine how to model infections for which such ‘population structure’ plays an important role in the transmission dynamics, and will learn some of the basic approaches to modelling vector-borne diseases, including the Ross-McDonald Model.
Even if you are not designing and simulating mathematical models in future, it is important to be able to critically assess a model so as to appreciate its strengths and weaknesses, and identify how it could be improved. One way of gaining this skill is to conduct a critical peer review of a modelling study as a reviewer, which is an opportunity you'll get by taking this course.
The other two courses in this specialisation have focused on performing deterministic modelling - that is, the epidemic outcome is predictable as all parameters are fully known. However, there are many cases, especially in the early stages of an epidemic, where chance events can be influential in the future of an epidemic. In this module, you will be introduced to some examples of such ‘stochasticity’, as well as, simple approaches to modelling these epidemics using R.
Welcome to Infectious Disease Modelling•10 minutes
About the Infectious Disease Modelling Team•10 minutes
Glossary•10 minutes
Modelling Infectious Disease Dynamics•35 minutes
Building on the SIR Model•3 minutes
The Story of MERS Coronavirus•10 minutes
Calculating Incidence in a Deterministic Model•45 minutes
The Resurgence of Measles•15 minutes
3 discussion prompts•Total 30 minutes
Discuss your Interest or Experience in Modelling•10 minutes
What connects measles and MERS-CoV?•10 minutes
Outbreaks and Surveillance•10 minutes
5 ungraded labs•Total 260 minutes
Completing Etivities in Jupyter Notebooks•60 minutes
R Reference Guide for IDM•60 minutes
Solving differential equations using ode() in R•60 minutes
Stochastic simulations of a novel pathogen•60 minutes
Solution: Stochastic simulations of a novel pathogen•20 minutes
Building on the SIR model: Heterogeneity
Module 2•6 hours to complete
Module details
In the basic deterministic SIR model, all susceptible individuals in a population are subject to the same risks of infection. However, there are many important infectious diseases where certain groups of the population account for a disproportionate amount of transmission: these are not always the same groups that bear the greatest amount of morbidity and mortality. In this module, you will examine how to model infections for which such ‘population structure’ plays an important role in the transmission dynamics.
Modelling Influenza Vaccination Policy in the UK•40 minutes
4 discussion prompts•Total 60 minutes
What Have Influenza and Syphilis Got in Common?•10 minutes
Modelling Age-Specific Contact Rates•20 minutes
Interpreting a Model with Age-Specific Mixing•20 minutes
Questions so far•10 minutes
6 ungraded labs•Total 240 minutes
Age-structured model in R•60 minutes
Solution: Age-structured model in R•20 minutes
Extend your model to three age groups•60 minutes
Solution: Extend your model to three age groups•20 minutes
Interventions in an age-structured population•60 minutes
Solution Interventions in an age-structured population•20 minutes
Building on the SIR model: Vector-borne Diseases
Module 3•5 hours to complete
Module details
Many important diseases are not directly transmitted between hosts, but depend on ‘vectors’ to pass infection between hosts, for example biting insects. It is important to be able to extend the modelling approaches you have studied so far to capture these more complex forms of natural history. In this module, you will learn some of the basic approaches to modelling vector-borne diseases, including the Ross-McDonald model, which is a framework that provides an important foundation for such diseases.
Ross MacDonald/Force of Infection - Part 1•4 minutes
Ross MacDonald/Force of Infection - Part 2•4 minutes
Vectorial Capacity - Part 1•2 minutes
Vectorial Capacity - Part 2: Impact of Interventions•6 minutes
A Closer Look at Interventions Against VBDs•6 minutes
Vector-borne Diseases: Interventions and R0•3 minutes
1 reading•Total 20 minutes
The Story of Dengue•20 minutes
2 discussion prompts•Total 40 minutes
Dengue and Onchocerciasis•20 minutes
Vectorial capacity and the impact of vector control interventions•20 minutes
4 ungraded labs•Total 200 minutes
Coding a VBD Model•60 minutes
Solution: Coding a VBD Model•60 minutes
Coding vector control interventions•60 minutes
Solution: Coding vector control interventions•20 minutes
Assignment: Modelling Study Critique
Module 4•2 hours to complete
Module details
Even if you are not designing and simulating mathematical models in future, it is important to be able to critically assess a model, to appreciate its strengths and weaknesses, and to identify how it could be improved. One way of gaining this skill is to conduct a critical peer review of a modelling study in the position of a reviewer evaluating it for publication in a journal. This module is reserved for the completion of your assignment - for you to apply the knowledge and skills you've developing throughout this specialisation.
What's included
1 peer review1 discussion prompt
Show info about module content
1 peer review•Total 60 minutes
Paper Critique•60 minutes
1 discussion prompt•Total 60 minutes
Practice Paper Critique•60 minutes
Earn a career certificate
Add this credential to your LinkedIn profile, resume, or CV. Share it on social media and in your performance review.
Instructor
Instructor ratings
Instructor ratings
We asked all learners to give feedback on our instructors based on the quality of their teaching style.
Imperial College London is a world top ten university with an international reputation for excellence in science, engineering, medicine and business. located in the heart of London. Imperial is a multidisciplinary space for education, research, translation and commercialisation, harnessing science and innovation to tackle global challenges.
Imperial students benefit from a world-leading, inclusive educational experience, rooted in the College’s world-leading research. Our online courses are designed to promote interactivity, learning and the development of core skills, through the use of cutting-edge digital technology.
"To be able to take courses at my own pace and rhythm has been an amazing experience. I can learn whenever it fits my schedule and mood."
Jennifer J.
Learner since 2020
"I directly applied the concepts and skills I learned from my courses to an exciting new project at work."
Larry W.
Learner since 2021
"When I need courses on topics that my university doesn't offer, Coursera is one of the best places to go."
Chaitanya A.
"Learning isn't just about being better at your job: it's so much more than that. Coursera allows me to learn without limits."
Learner reviews
4.5
31 reviews
5 stars
74.19%
4 stars
16.12%
3 stars
3.22%
2 stars
0%
1 star
6.45%
Showing 3 of 31
K
KM
5·
Reviewed on Jul 1, 2023
The peer review grade is not working properly. It is not showing result.
G
GC
5·
Reviewed on Jun 23, 2020
I thought it was clear, the syntax problems were about the same topic and needed the solution talked about in the videos. The subject was completely covered. I already recommended it to like 5 people.
R
RB
5·
Reviewed on Jul 28, 2023
This course is really amazing .Excellent insight learning and gives room for nurturing the knowledge gained.
When will I have access to the lectures and assignments?
To access the course materials, assignments and to earn a Certificate, you will need to purchase the Certificate experience when you enroll in a course. You can try a Free Trial instead, or apply for Financial Aid. The course may offer 'Full Course, No Certificate' instead. This option lets you see all course materials, submit required assessments, and get a final grade. This also means that you will not be able to purchase a Certificate experience.
What will I get if I subscribe to this Specialization?
When you enroll in the course, you get access to all of the courses in the Specialization, and you earn a certificate when you complete the work. Your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile.
Is financial aid available?
Yes. In select learning programs, you can apply for financial aid or a scholarship if you can’t afford the enrollment fee. If fin aid or scholarship is available for your learning program selection, you’ll find a link to apply on the description page.