About this Course
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Flexible deadlines

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Intermediate Level

None required but you should be familiar with basic aspects of plant and molecular biology. Bioinformatic Methods I and II would be good preparation

Approx. 11 hours to complete

Suggested: 6 weeks of hands-on study, plus 2 evaluation weeks. The hands-on modules will take 2-4 hours of time...

English

Subtitles: English

100% online

Start instantly and learn at your own schedule.

Flexible deadlines

Reset deadlines in accordance to your schedule.

Intermediate Level

None required but you should be familiar with basic aspects of plant and molecular biology. Bioinformatic Methods I and II would be good preparation

Approx. 11 hours to complete

Suggested: 6 weeks of hands-on study, plus 2 evaluation weeks. The hands-on modules will take 2-4 hours of time...

English

Subtitles: English

Syllabus - What you will learn from this course

Week
1
3 hours to complete

Plant Genomic Databases, and useful sites for info about proteins

4 videos (Total 44 min), 4 readings, 1 quiz
4 videos
Mini-lecture17m
Lab Discussion23m
Summary1m
4 readings
Acknowledgements10m
Course Logistics10m
Mini-lecture Notes10m
Lab 1 -- Plant Genomic Databases and Tools for Exploring Protein Information1h 30m
1 practice exercise
Lab Quiz 1
Week
2
2 hours to complete

Expression Analysis

4 videos (Total 38 min), 2 readings, 1 quiz
4 videos
Mini-lecture17m
Lab Discussion18m
Summary50s
2 readings
Mini-lecture Notes10m
Lab 2 -- Expression Analysis1h 30m
1 practice exercise
Lab Quiz 2
Week
3
2 hours to complete

Coexpression Tools

4 videos (Total 29 min), 2 readings, 1 quiz
4 videos
Mini-lecture9m
Lab Discussion16m
Summary49s
2 readings
Mini-lecture Notes10m
Lab 3 -- Coexpression Tools1h 30m
1 practice exercise
Lab Quiz 3
Week
4

Sectional Quiz 1

1 quiz
1 practice exercise
Sectional Quiz 1
4.8
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Top reviews from Plant Bioinformatics

By QRMar 10th 2019

Very good course for mastering bioinformatics skills. Genetics and molecular biology students/professionals should take this course to augment their research skills.

By FSNov 9th 2019

Professor Provart is very good and the labs taught us in simple and direct instructions how to perform a wide range of analysis regarding Plant Bioinformatics.

Instructor

Avatar

Nicholas James Provart

Professor
Cell & Systems Biology

About University of Toronto

Established in 1827, the University of Toronto is one of the world’s leading universities, renowned for its excellence in teaching, research, innovation and entrepreneurship, as well as its impact on economic prosperity and social well-being around the globe. ...

About the Plant Bioinformatic Methods Specialization

The past 15 years have been exciting ones in plant biology. Hundreds of plant genomes have been sequenced, RNA-seq has enabled transcriptome-wide expression profiling, and a proliferation of "-seq"-based methods has permitted protein-protein and protein-DNA interactions to be determined cheaply and in a high-throughput manner. These data sets in turn allow us to generate hypotheses at the click of a mouse or tap of a finger.The Plant Bioinformatics Specialization on Coursera introduces core bioinformatic competencies and resources, such as NCBI's Genbank, Blast, multiple sequence alignments, phylogenetics in Bioinformatic Methods I, followed by protein-protein interaction, structural bioinformatics and RNA-seq analysis in Bioinformatic Methods II. In Plant Bioinformatics we cover 33 plant-specific online tools from genome browsers to transcriptomic data mining to promoter/network analyses and others. Last, a Plant Bioinformatics Capstone uses these tools to hypothesize a biological role for a gene of unknown function, summarized in a written lab report.This specialization is useful to any modern plant molecular biologist wanting to get a feeling for the incredible scope of data available to researchers. A small amount of R programming is introduced in Bioinformatic Methods II, but most of the tools are web applications. It is recommended that you have access to a laptop or desktop computer for running these as they may not work as mobile applications on your phone or tablet....
Plant Bioinformatic Methods

Frequently Asked Questions

  • Once you enroll for a Certificate, you’ll have access to all videos, quizzes, and programming assignments (if applicable). Peer review assignments can only be submitted and reviewed once your session has begun. If you choose to explore the course without purchasing, you may not be able to access certain assignments.

  • When you enroll in the course, you get access to all of the courses in the Specialization, and you earn a certificate when you complete the work. Your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile. If you only want to read and view the course content, you can audit the course for free.

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