Back to Bacterial Bioinformatics
University of Virginia

Bacterial Bioinformatics

This course provides demonstrations and exercises for performing common genomics-based analysis tasks of bacterial sequence data. It uses BV-BRC, the Bacterial and Viral Bioinformatics Resource Center (merger of PATRIC, IRD and ViPR, the three former resources), as the platform for analysis. BV-BRC is the NIH/NIAID-funded bacterial Bioinformatics Resource Center, providing comprehensive bacterial genomic data with integrated analysis tools and visualizations. BV-BRC also provides a private workspace where users can upload and analyze their own data. Course participants will gain skills needed to do comparative analysis of bacterial genomes, starting with raw sequence data.The lessons in the first module cover genome assembly, annotation, phylogenetic tree construction, and protein family / proteome comparisons. Each lesson builds on the previous, creating a complete baseline analysis workflow. NOTE: The exercises in this course were developed using the PATRIC, the predecessor system to BV-BRC. However, BV-BRC was built from PATRIC, so most of the content is still the same.

Status: Scientific Visualization
Status: Data Integration
IntermediateCourse14 hours

Featured reviews

AS

5.0Reviewed Feb 6, 2024

It is really good...got to learn more about health informatics

AA

5.0Reviewed Apr 4, 2025

I have learnt so much from this course, although I am yet to complete it. Thumps up to Rebecca Wattam and PATRIC.org

PG

4.0Reviewed Aug 14, 2025

the course is great but i didnt receive any certificate

WL

5.0Reviewed Dec 4, 2022

It is a very good course to start to analyze biodata

YS

5.0Reviewed Oct 27, 2022

V​ery informative course content and I have learned a lot

PP

5.0Reviewed Dec 23, 2020

very useful course , can solve a lot of problem in bacterium genome analysis easily

NG

5.0Reviewed Feb 14, 2022

it was very informative course and i enjoyed doing home works and assessments.thank youRegardsNeeraja

MB

4.0Reviewed Jan 19, 2024

I expected a bit more of normal tools, but im happy that i got to know patric

JG

5.0Reviewed Jun 20, 2025

this course is very helpful for my project and give extra information about each genome .

EK

5.0Reviewed Oct 18, 2025

Thank you, Dr Rebecca, your effort are appreciated, great benefit by practicing through PATRIC

TM

5.0Reviewed May 14, 2025

As a PhD student, I greatly appreciated this course. Professor Rebecca's thorough explanations on a wide range of topics were incredibly valuable—thank you for your dedication!

GG

4.0Reviewed Feb 4, 2022

i appreciate the dedication and design of the course. it so practical and friendly. thank You Dr. Rebecca.

All reviews

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ping.hu@gmail.com
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Reviewed Dec 24, 2020
Megan Mauriello
3.0
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2040_ANSHU SHAHI
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Reviewed Feb 26, 2021
Abdul Kader
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Reviewed Jan 28, 2021
Sivaraman GK
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Wael Hadi
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Aseel Araji
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Aline Parolin Calarga
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Nicholas H
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Dewan S Khan
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Muhammad Qudduse Ahmad Rao
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Osman Merdan
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Tilaye Shibbiru MENGISTU
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Reviewed May 15, 2025