Bioconductor for Genomic Data Science

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Bioconductor for Genomic Data Science

This course is part of Genomic Data Science Specialization

Instructor: Kasper Daniel Hansen, PhD

26,121 already enrolled

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4 modules

Gain insight into a topic and learn the fundamentals.

386 reviews

9 hours to complete

Flexible schedule

Learn at your own pace

88%

Most learners liked this course

4 modules

Gain insight into a topic and learn the fundamentals.

386 reviews

9 hours to complete

Flexible schedule

Learn at your own pace

88%

Most learners liked this course

Skills you'll gain

Tools you'll learn

Details to know

Shareable certificate

Add to your LinkedIn profile

Assessments

4 assignments

Taught in English

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This course is part of the Genomic Data Science Specialization

When you enroll in this course, you'll also be enrolled in this Specialization.

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There are 4 modules in this course

Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.

The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.

What's included

16 videos3 readings1 assignment

16 videosTotal 126 minutes

Installing R on Windows 3 minutes
Installing R on A Mac 2 minutes
Installing R Studio on a Mac 2 minutes
What is Bioconductor7 minutes
Installing Bioconductor4 minutes
The Bioconductor Website10 minutes
Useful Online Resources5 minutes
R Base Types18 minutes
GRanges - Overview5 minutes
IRanges - Basic Usage12 minutes
GenomicRanges - GRanges9 minutes
GenomicRanges - Basic GRanges Usage8 minutes
GenomicRanges - seqinfo6 minutes
AnnotationHub8 minutes
Usecase: AnnotationHub and GRanges, part 113 minutes
Usecase: AnnotationHub and GRanges, part 214 minutes

3 readingsTotal 30 minutes

Welcome10 minutes
Syllabus10 minutes
Pre Course Survey10 minutes

1 assignmentTotal 30 minutes

Quiz 130 minutes

In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.

What's included

8 videos1 assignment

In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.

What's included

9 videos1 assignment

In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi

What's included

7 videos1 reading1 assignment

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Instructor

Instructor ratings

(37 ratings)

Kasper Daniel Hansen, PhD

Johns Hopkins University

2 Courses26,473 learners

Offered by

Johns Hopkins University

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Reviewed on Jun 11, 2020

A great initiative taken by Johns Hopkins University.

Reviewed on Feb 9, 2016

I learned a lot from this class and the instructor is good.

Reviewed on Mar 11, 2016

Excellent introduction to Bioconductor. Thanks to the team. However, absence of inputs from TA or Instructor was felt in the discussion.

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Frequently asked questions

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When you enroll in the course, you get access to all of the courses in the Specialization, and you earn a certificate when you complete the work. Your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile.

Yes. In select learning programs, you can apply for financial aid or a scholarship if you can’t afford the enrollment fee. If fin aid or scholarship is available for your learning program selection, you’ll find a link to apply on the description page.