About this Course

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Learner Career Outcomes

50%

started a new career after completing these courses

43%

got a tangible career benefit from this course

20%

got a pay increase or promotion
Shareable Certificate
Earn a Certificate upon completion
100% online
Start instantly and learn at your own schedule.
Flexible deadlines
Reset deadlines in accordance to your schedule.
Approx. 12 hours to complete
English

Skills you will gain

BioinformaticsSamtoolsUnixCommand-Line Interface

Learner Career Outcomes

50%

started a new career after completing these courses

43%

got a tangible career benefit from this course

20%

got a pay increase or promotion
Shareable Certificate
Earn a Certificate upon completion
100% online
Start instantly and learn at your own schedule.
Flexible deadlines
Reset deadlines in accordance to your schedule.
Approx. 12 hours to complete
English

Offered by

Placeholder

Johns Hopkins University

Syllabus - What you will learn from this course

Content RatingThumbs Up88%(1,782 ratings)Info
Week
1

Week 1

4 hours to complete

Basic Unix Commands

4 hours to complete
12 videos (Total 105 min), 5 readings, 2 quizzes
12 videos
Basic Unix Commands 2: Files, Directories, Paths7m
Basic Unix Commands 3: File Naming4m
Basic Unix Commands 4: Content Creation9m
Basic Unix Commands 5: Accessing Content I6m
Basic Unix Commands 6: Accessing Content II4m
Basic Unix Commands 7: Redirecting Content6m
Basic Unix Commands 8: Querying Content15m
Basic Unix Commands 9: Comparing Content11m
Basic Unix Commands 10: Archiving Content13m
Basic Unix Commands 11: Practical Exercises I13m
Basic Unix Commands 12: Practical Exercises II9m
5 readings
Welcome Message10m
Syllabus10m
VMBox Download & Instructions10m
Pre-Course Survey10m
Module 1 Exam Instructions **IMPORTANT**10m
2 practice exercises
Module 1 Quiz30m
Module 1 Exam30m
Week
2

Week 2

3 hours to complete

Week Two

3 hours to complete
11 videos (Total 127 min), 1 reading, 2 quizzes
11 videos
Sequences and Genomic Features 2: Sequence Representation and Generation11m
Sequences and Genomic Features 3: Annotation14m
Sequences and Genomic Features 4.1: Alignment I13m
Sequences and Genomic Features 4.2: Alignment II9m
Sequences and Genomic Features 5: Recreating Sequences & Features12m
Sequences and Genomic Features 6: Genomic Feature Retrieval5m
Sequences and Genomic Features 7: SAMtools I11m
Sequences and Genomic Features 8: SAMtools II9m
Sequences and Genomic Features 9: BEDtools I15m
Sequences and Genomic Features 10: BEDtools II15m
1 reading
Module 2 Exam Instructions **IMPORTANT**10m
2 practice exercises
Module 2 Quiz30m
Module 2 Exam30m
Week
3

Week 3

2 hours to complete

Week Three

2 hours to complete
8 videos (Total 55 min), 1 reading, 2 quizzes
8 videos
Alignment & Sequence Variation 2: Alignment & Variant Detection Tools5m
Alignment & Sequence Variation 3: VCF11m
Alignment & Sequence Variation 4: Bowtie9m
Alignment & Sequence Variation 5: BWA 4m
Alignment & Sequence Variation 6: SAMtools (mpileup)6m
Alignment & Sequence Variation 7: BCFtools8m
Alignment & Sequence Variation 8: Variant Calling5m
1 reading
Module 3 Exam Instructions **IMPORTANT**10m
2 practice exercises
Module 3 Quiz30m
Module 3 Exam30m
Week
4

Week 4

3 hours to complete

Week Four

3 hours to complete
8 videos (Total 75 min), 2 readings, 2 quizzes
8 videos
Tools for Transcriptomics 2: RNA-seq7m
Tools for Transcriptomics 3.1: Tophat I9m
Tools for Transcriptomics 3.2: Tophat II 8m
Tools for Transcriptomics 4: Cufflinks10m
Tools for Transcriptomics 5: Cuffdiff16m
Tools for Transcriptomics 6.1: Integrated Genomics Viewer I8m
Tools for Transcriptomics 6.2: Integrated Genomics Viewer II 6m
2 readings
Module 4 Exam Instructions **IMPORTANT**10m
Post-Course Survey10m
2 practice exercises
Module 4 Quiz30m
Module 4 Exam30m

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About the Genomic Data Science Specialization

Genomic Data Science

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