Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.
Offered By
Johns Hopkins UniversityAbout this Course
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Approx. 9 hours to complete
English
Subtitles: French, Portuguese (European), Russian, English, Spanish
Skills you will gain
- Bioinformatics
- Bioconductor
- Genomics
- R Programming
Flexible deadlines
Reset deadlines in accordance to your schedule.
Shareable Certificate
Earn a Certificate upon completion
100% online
Start instantly and learn at your own schedule.
Approx. 9 hours to complete
English
Subtitles: French, Portuguese (European), Russian, English, Spanish
Offered by
Johns Hopkins University
The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.
Syllabus - What you will learn from this course
3 hours to complete
Week One
The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.
3 hours to complete
16 videos (Total 126 min), 3 readings, 1 quiz
2 hours to complete
Week Two
In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.
2 hours to complete
8 videos (Total 81 min)
2 hours to complete
Week Three
In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.
2 hours to complete
9 videos (Total 79 min)
2 hours to complete
Week Four
In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi
2 hours to complete
7 videos (Total 81 min), 1 reading, 1 quiz
Reviews
TOP REVIEWS FROM BIOCONDUCTOR FOR GENOMIC DATA SCIENCE
by ATJan 29, 2016
Four stars because the content is good. Not five stars because the english is not so good and for a non-english expert it can be difficult to understand, and the subtitle contains quite often errors.
by JKAug 30, 2016
I think it is a good class overall but the pace is fast and the resources that can help you is lacking. This will be good for someone who already kind of understands bioconductor.
by GKAug 27, 2019
Before you can run, you must learn to walk. Kasper's well paced tutorials will give you confidence using the tools you need for genomic study.
by MAMar 11, 2016
Excellent introduction to Bioconductor. Thanks to the team. However, absence of inputs from TA or Instructor was felt in the discussion.
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