About this Course

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Approx. 9 hours to complete
English

Skills you will gain

BioinformaticsBioconductorGenomicsR Programming
Shareable Certificate
Earn a Certificate upon completion
100% online
Start instantly and learn at your own schedule.
Flexible deadlines
Reset deadlines in accordance to your schedule.
Approx. 9 hours to complete
English

Offered by

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Johns Hopkins University

Syllabus - What you will learn from this course

Week
1

Week 1

3 hours to complete

Week One

3 hours to complete
16 videos (Total 126 min), 3 readings, 1 quiz
16 videos
Installing R on A Mac 2m
Installing R Studio on a Mac 1m
What is Bioconductor7m
Installing Bioconductor3m
The Bioconductor Website9m
Useful Online Resources5m
R Base Types18m
GRanges - Overview4m
IRanges - Basic Usage12m
GenomicRanges - GRanges8m
GenomicRanges - Basic GRanges Usage8m
GenomicRanges - seqinfo6m
AnnotationHub8m
Usecase: AnnotationHub and GRanges, part 112m
Usecase: AnnotationHub and GRanges, part 213m
3 readings
Welcome10m
Syllabus10m
Pre Course Survey10m
1 practice exercise
Quiz 130m
Week
2

Week 2

2 hours to complete

Week Two

2 hours to complete
8 videos (Total 81 min)
8 videos
BSgenome6m
Biostrings - Matching6m
BSgenome - Views9m
GenomicRanges - Rle12m
GenomicRanges - Lists6m
GenomicFeatures18m
rtracklayer - Data Import14m
1 practice exercise
Quiz 230m
Week
3

Week 3

2 hours to complete

Week Three

2 hours to complete
9 videos (Total 79 min)
9 videos
Annotation Overview4m
ExpressionSet Overview4m
ExpressionSet9m
SummarizedExperiment7m
GEOquery6m
biomaRt13m
R S4 Classes16m
R S4 Methods10m
1 practice exercise
Quiz 330m
Week
4

Week 4

2 hours to complete

Week Four

2 hours to complete
7 videos (Total 81 min), 1 reading, 1 quiz
7 videos
Short Read4m
Rsamtools12m
oligo14m
limma16m
minfi11m
Count-based RNA-seq analysis15m
1 reading
Post Course Survey10m
1 practice exercise
Quiz 430m

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About the Genomic Data Science Specialization

Genomic Data Science

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